Cluster: HRGMv2_4639_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_21 | HRGMv2_4639_21_55 | 51777 | 53051 | - | 1.B.52.2.1 |
| pfam | HRGMv2_4639_21 | HRGMv2_4639_21_56 | 53211 | 54041 | - | TatD_DNase |
| CAZyme | HRGMv2_4639_21 | HRGMv2_4639_21_57 | 54130 | 55560 | + | GH23 |
| NULL(UNKNOWN) | HRGMv2_4639_21 | HRGMv2_4639_21_58 | 55714 | 56019 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4639_21 | HRGMv2_4639_21_59 | 56023 | 56526 | - | GreA_GreB | GreA_GreB_N |
| TC | HRGMv2_4639_21 | HRGMv2_4639_21_60 | 56530 | 58680 | - | 3.A.1.122.15 |
Gene ID: HRGMv2_4639_21_55
Type: TC
Location: 51777 - 53051 (-)
Type: TC
Location: 51777 - 53051 (-)
Gene ID: HRGMv2_4639_21_56
Type: pfam
Location: 53211 - 54041 (-)
Type: pfam
Location: 53211 - 54041 (-)
Gene ID: HRGMv2_4639_21_57
Type: CAZyme
Location: 54130 - 55560 (+)
Type: CAZyme
Location: 54130 - 55560 (+)
Gene ID: HRGMv2_4639_21_58
Type:
Location: 55714 - 56019 (+)
Type:
Location: 55714 - 56019 (+)
Gene ID: HRGMv2_4639_21_59
Type: pfam
Location: 56023 - 56526 (-)
Type: pfam
Location: 56023 - 56526 (-)
Gene ID: HRGMv2_4639_21_60
Type: TC
Location: 56530 - 58680 (-)
Type: TC
Location: 56530 - 58680 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.