Cluster: HRGMv2_4639_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_21 | HRGMv2_4639_21_46 | 43983 | 45092 | + | GH109 |
| pfam | HRGMv2_4639_21 | HRGMv2_4639_21_47 | 45155 | 45322 | - | DUF2897 |
| TC | HRGMv2_4639_21 | HRGMv2_4639_21_48 | 45371 | 45826 | - | 2.A.117.1.2 |
Gene ID: HRGMv2_4639_21_46
Type: CAZyme
Location: 43983 - 45092 (+)
Type: CAZyme
Location: 43983 - 45092 (+)
Gene ID: HRGMv2_4639_21_47
Type: pfam
Location: 45155 - 45322 (-)
Type: pfam
Location: 45155 - 45322 (-)
Gene ID: HRGMv2_4639_21_48
Type: TC
Location: 45371 - 45826 (-)
Type: TC
Location: 45371 - 45826 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.