Cluster: HRGMv2_4639_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_00344
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_35 | 44715 | 45371 | + | GT2 |
| TF | HRGMv2_4639_20 | HRGMv2_4639_20_36 | 45372 | 46166 | - | HTH_AraC |
| TC | HRGMv2_4639_20 | HRGMv2_4639_20_37 | 46243 | 47253 | + | 2.A.28.3.4 |
Gene ID: HRGMv2_4639_20_35
Type: CAZyme
Location: 44715 - 45371 (+)
Type: CAZyme
Location: 44715 - 45371 (+)
Gene ID: HRGMv2_4639_20_36
Type: TF
Location: 45372 - 46166 (-)
Type: TF
Location: 45372 - 46166 (-)
Gene ID: HRGMv2_4639_20_37
Type: TC
Location: 46243 - 47253 (+)
Type: TC
Location: 46243 - 47253 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.