Cluster: HRGMv2_4639_CGC18
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_09159
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_20 | HRGMv2_4639_20_13 | 10831 | 11952 | + | 1.A.23.7.1 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_14 | 12301 | 13884 | + | GT5 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_15 | 14044 | 15849 | + | GH13_10 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_16 | 15846 | 17912 | + | GH77 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_17 | 17909 | 20716 | + | GH13_26 |
| pfam | HRGMv2_4639_20 | HRGMv2_4639_20_18 | 20713 | 21219 | + | DUF2934 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_19 | 21469 | 23658 | + | CBM48 | GH13_11 |
| pfam | HRGMv2_4639_20 | HRGMv2_4639_20_20 | 23655 | 24416 | + | Exo_endo_phos |
| pfam | HRGMv2_4639_20 | HRGMv2_4639_20_21 | 24413 | 25660 | + | PLDc | PLDc_2 | PLDc_2 |
| TC | HRGMv2_4639_20 | HRGMv2_4639_20_22 | 25657 | 26703 | + | 4.D.2.4.3 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_23 | 26712 | 27437 | - | PL7_1 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_24 | 27527 | 29746 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_25 | 29743 | 33072 | - | GH13_16 |
| CAZyme | HRGMv2_4639_20 | HRGMv2_4639_20_26 | 33206 | 35209 | - | GH13_3 |
Gene ID: HRGMv2_4639_20_13
Type: TC
Location: 10831 - 11952 (+)
Type: TC
Location: 10831 - 11952 (+)
Gene ID: HRGMv2_4639_20_14
Type: CAZyme
Location: 12301 - 13884 (+)
Type: CAZyme
Location: 12301 - 13884 (+)
Gene ID: HRGMv2_4639_20_15
Type: CAZyme
Location: 14044 - 15849 (+)
Type: CAZyme
Location: 14044 - 15849 (+)
Gene ID: HRGMv2_4639_20_16
Type: CAZyme
Location: 15846 - 17912 (+)
Type: CAZyme
Location: 15846 - 17912 (+)
Gene ID: HRGMv2_4639_20_17
Type: CAZyme
Location: 17909 - 20716 (+)
Type: CAZyme
Location: 17909 - 20716 (+)
Gene ID: HRGMv2_4639_20_18
Type: pfam
Location: 20713 - 21219 (+)
Type: pfam
Location: 20713 - 21219 (+)
Gene ID: HRGMv2_4639_20_19
Type: CAZyme
Location: 21469 - 23658 (+)
Type: CAZyme
Location: 21469 - 23658 (+)
Gene ID: HRGMv2_4639_20_20
Type: pfam
Location: 23655 - 24416 (+)
Type: pfam
Location: 23655 - 24416 (+)
Gene ID: HRGMv2_4639_20_21
Type: pfam
Location: 24413 - 25660 (+)
Type: pfam
Location: 24413 - 25660 (+)
Gene ID: HRGMv2_4639_20_22
Type: TC
Location: 25657 - 26703 (+)
Type: TC
Location: 25657 - 26703 (+)
Gene ID: HRGMv2_4639_20_23
Type: CAZyme
Location: 26712 - 27437 (-)
Type: CAZyme
Location: 26712 - 27437 (-)
Gene ID: HRGMv2_4639_20_24
Type: CAZyme
Location: 27527 - 29746 (-)
Type: CAZyme
Location: 27527 - 29746 (-)
Gene ID: HRGMv2_4639_20_25
Type: CAZyme
Location: 29743 - 33072 (-)
Type: CAZyme
Location: 29743 - 33072 (-)
Gene ID: HRGMv2_4639_20_26
Type: CAZyme
Location: 33206 - 35209 (-)
Type: CAZyme
Location: 33206 - 35209 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.