Cluster: HRGMv2_4639_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_00185
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4639_19 | HRGMv2_4639_19_24 | 24486 | 25931 | + | 1.A.26.1.2 |
| TF | HRGMv2_4639_19 | HRGMv2_4639_19_25 | 25983 | 26297 | - | Arc |
| CAZyme | HRGMv2_4639_19 | HRGMv2_4639_19_26 | 26879 | 27901 | + | GT2 |
Gene ID: HRGMv2_4639_19_24
Type: TC
Location: 24486 - 25931 (+)
Type: TC
Location: 24486 - 25931 (+)
Gene ID: HRGMv2_4639_19_25
Type: TF
Location: 25983 - 26297 (-)
Type: TF
Location: 25983 - 26297 (-)
Gene ID: HRGMv2_4639_19_26
Type: CAZyme
Location: 26879 - 27901 (+)
Type: CAZyme
Location: 26879 - 27901 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.