Cluster: HRGMv2_4639_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_01364
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_16 | HRGMv2_4639_16_16 | 13969 | 16566 | + | GT2 |
| pfam | HRGMv2_4639_16 | HRGMv2_4639_16_17 | 16638 | 17348 | - | Methyltrans_RNA |
| TC | HRGMv2_4639_16 | HRGMv2_4639_16_18 | 17345 | 18142 | - | 2.A.64.1.1 |
| pfam | HRGMv2_4639_16 | HRGMv2_4639_16_19 | 18139 | 18495 | - | TatA_B_E |
| TC | HRGMv2_4639_16 | HRGMv2_4639_16_20 | 18505 | 18771 | - | 2.A.64.1.1 |
Gene ID: HRGMv2_4639_16_16
Type: CAZyme
Location: 13969 - 16566 (+)
Type: CAZyme
Location: 13969 - 16566 (+)
Gene ID: HRGMv2_4639_16_17
Type: pfam
Location: 16638 - 17348 (-)
Type: pfam
Location: 16638 - 17348 (-)
Gene ID: HRGMv2_4639_16_18
Type: TC
Location: 17345 - 18142 (-)
Type: TC
Location: 17345 - 18142 (-)
Gene ID: HRGMv2_4639_16_19
Type: pfam
Location: 18139 - 18495 (-)
Type: pfam
Location: 18139 - 18495 (-)
Gene ID: HRGMv2_4639_16_20
Type: TC
Location: 18505 - 18771 (-)
Type: TC
Location: 18505 - 18771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.