Cluster: HRGMv2_4639_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4639
- CGC Family ID: CGCFAM_00002
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4639_14 | HRGMv2_4639_14_51 | 57837 | 58913 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_4639_14 | HRGMv2_4639_14_52 | 58882 | 59958 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4639_14 | HRGMv2_4639_14_53 | 59955 | 60797 | + | GT2 |
| TC | HRGMv2_4639_14 | HRGMv2_4639_14_54 | 60924 | 61904 | + | 9.B.126.2.4 |
Gene ID: HRGMv2_4639_14_51
Type: CAZyme
Location: 57837 - 58913 (+)
Type: CAZyme
Location: 57837 - 58913 (+)
Gene ID: HRGMv2_4639_14_52
Type:
Location: 58882 - 59958 (+)
Type:
Location: 58882 - 59958 (+)
Gene ID: HRGMv2_4639_14_53
Type: CAZyme
Location: 59955 - 60797 (+)
Type: CAZyme
Location: 59955 - 60797 (+)
Gene ID: HRGMv2_4639_14_54
Type: TC
Location: 60924 - 61904 (+)
Type: TC
Location: 60924 - 61904 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_B
Species
Pseudomonas_B oryzihabitans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.