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Cluster: HRGMv2_4639_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4639_14 HRGMv2_4639_14_4 2720 3709 + GT2
pfam HRGMv2_4639_14 HRGMv2_4639_14_5 3724 5703 + Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam HRGMv2_4639_14 HRGMv2_4639_14_6 5703 6596 + Polysacc_deac_1
CAZyme HRGMv2_4639_14 HRGMv2_4639_14_7 6593 8236 + GT83
TC HRGMv2_4639_14 HRGMv2_4639_14_8 8233 8574 + 2.A.7.22.1
NULL(UNKNOWN) HRGMv2_4639_14 HRGMv2_4639_14_9 8571 8972 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4639_14 HRGMv2_4639_14_10 8969 10387 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_4639_14 HRGMv2_4639_14_11 10366 12048 + GT83
NULL(UNKNOWN) HRGMv2_4639_14 HRGMv2_4639_14_12 12069 12437 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_4639_14 HRGMv2_4639_14_13 13035 14216 - M20.UPD
TC HRGMv2_4639_14 HRGMv2_4639_14_14 14228 15535 - 2.A.1.6.1
pfam HRGMv2_4639_14 HRGMv2_4639_14_15 15802 16773 + PBP_like_2
TC HRGMv2_4639_14 HRGMv2_4639_14_16 16868 19153 + 3.A.1.7.5
TC HRGMv2_4639_14 HRGMv2_4639_14_17 19140 20852 + 3.A.1.7.3
TC HRGMv2_4639_14 HRGMv2_4639_14_18 20868 21695 + 3.A.1.7.1
pfam HRGMv2_4639_14 HRGMv2_4639_14_19 21754 22479 + PhoU | PhoU
STP HRGMv2_4639_14 HRGMv2_4639_14_20 22552 23472 + Response_reg
TC HRGMv2_4639_14 HRGMv2_4639_14_21 23550 24449 + 1.A.34.1.3
TF HRGMv2_4639_14 HRGMv2_4639_14_22 24606 25406 - HTH_AraC
STP HRGMv2_4639_14 HRGMv2_4639_14_23 25755 26642 + Peptidase_M23
TC HRGMv2_4639_14 HRGMv2_4639_14_24 26830 28731 + 9.B.34.1.2
TC HRGMv2_4639_14 HRGMv2_4639_14_25 28744 30108 - 9.A.40.2.2
Gene ID: HRGMv2_4639_14_4
Type: CAZyme
Location: 2720 - 3709 (+)
Gene ID: HRGMv2_4639_14_5
Type: pfam
Location: 3724 - 5703 (+)
Gene ID: HRGMv2_4639_14_6
Type: pfam
Location: 5703 - 6596 (+)
Gene ID: HRGMv2_4639_14_7
Type: CAZyme
Location: 6593 - 8236 (+)
Gene ID: HRGMv2_4639_14_8
Type: TC
Location: 8233 - 8574 (+)
Gene ID: HRGMv2_4639_14_9
Type:
Location: 8571 - 8972 (+)
Gene ID: HRGMv2_4639_14_10
Type: pfam
Location: 8969 - 10387 (+)
Gene ID: HRGMv2_4639_14_11
Type: CAZyme
Location: 10366 - 12048 (+)
Gene ID: HRGMv2_4639_14_12
Type:
Location: 12069 - 12437 (-)
Gene ID: HRGMv2_4639_14_13
Type: peptidase
Location: 13035 - 14216 (-)
Gene ID: HRGMv2_4639_14_14
Type: TC
Location: 14228 - 15535 (-)
Gene ID: HRGMv2_4639_14_15
Type: pfam
Location: 15802 - 16773 (+)
Gene ID: HRGMv2_4639_14_16
Type: TC
Location: 16868 - 19153 (+)
Gene ID: HRGMv2_4639_14_17
Type: TC
Location: 19140 - 20852 (+)
Gene ID: HRGMv2_4639_14_18
Type: TC
Location: 20868 - 21695 (+)
Gene ID: HRGMv2_4639_14_19
Type: pfam
Location: 21754 - 22479 (+)
Gene ID: HRGMv2_4639_14_20
Type: STP
Location: 22552 - 23472 (+)
Gene ID: HRGMv2_4639_14_21
Type: TC
Location: 23550 - 24449 (+)
Gene ID: HRGMv2_4639_14_22
Type: TF
Location: 24606 - 25406 (-)
Gene ID: HRGMv2_4639_14_23
Type: STP
Location: 25755 - 26642 (+)
Gene ID: HRGMv2_4639_14_24
Type: TC
Location: 26830 - 28731 (+)
Gene ID: HRGMv2_4639_14_25
Type: TC
Location: 28744 - 30108 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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