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Cluster: HRGMv2_4630_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4630_2 HRGMv2_4630_2_401 409076 411106 + 1.B.52.2.2
pfam HRGMv2_4630_2 HRGMv2_4630_2_402 411345 412124 - TatD_DNase
TF HRGMv2_4630_2 HRGMv2_4630_2_403 412129 413160 - LacI
TC HRGMv2_4630_2 HRGMv2_4630_2_404 413325 416219 + 4.A.2.1.17
STP HRGMv2_4630_2 HRGMv2_4630_2_405 416219 417166 + PfkB
TC HRGMv2_4630_2 HRGMv2_4630_2_406 417193 418947 + 4.A.2.1.17
pfam HRGMv2_4630_2 HRGMv2_4630_2_407 419047 420429 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
NULL(UNKNOWN) HRGMv2_4630_2 HRGMv2_4630_2_408 420470 420898 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4630_2 HRGMv2_4630_2_409 420895 421239 - 2.A.7.22.2
CAZyme HRGMv2_4630_2 HRGMv2_4630_2_410 421236 422882 - GT83
pfam HRGMv2_4630_2 HRGMv2_4630_2_411 422879 423763 - Polysacc_deac_1
pfam HRGMv2_4630_2 HRGMv2_4630_2_412 423763 425784 - Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme HRGMv2_4630_2 HRGMv2_4630_2_413 425781 426785 - GT2
STP HRGMv2_4630_2 HRGMv2_4630_2_414 426793 427932 - Aminotran_1_2
TC HRGMv2_4630_2 HRGMv2_4630_2_415 428211 430274 + 3.A.1.3.23
TC HRGMv2_4630_2 HRGMv2_4630_2_416 430344 431129 + 3.A.1.3.23
TC HRGMv2_4630_2 HRGMv2_4630_2_417 431211 431921 + 3.A.1.3.5
TC HRGMv2_4630_2 HRGMv2_4630_2_418 431935 432684 + 3.A.1.3.23
Gene ID: HRGMv2_4630_2_401
Type: TC
Location: 409076 - 411106 (+)
Gene ID: HRGMv2_4630_2_402
Type: pfam
Location: 411345 - 412124 (-)
Gene ID: HRGMv2_4630_2_403
Type: TF
Location: 412129 - 413160 (-)
Gene ID: HRGMv2_4630_2_404
Type: TC
Location: 413325 - 416219 (+)
Gene ID: HRGMv2_4630_2_405
Type: STP
Location: 416219 - 417166 (+)
Gene ID: HRGMv2_4630_2_406
Type: TC
Location: 417193 - 418947 (+)
Gene ID: HRGMv2_4630_2_407
Type: pfam
Location: 419047 - 420429 (-)
Gene ID: HRGMv2_4630_2_408
Type:
Location: 420470 - 420898 (-)
Gene ID: HRGMv2_4630_2_409
Type: TC
Location: 420895 - 421239 (-)
Gene ID: HRGMv2_4630_2_410
Type: CAZyme
Location: 421236 - 422882 (-)
Gene ID: HRGMv2_4630_2_411
Type: pfam
Location: 422879 - 423763 (-)
Gene ID: HRGMv2_4630_2_412
Type: pfam
Location: 423763 - 425784 (-)
Gene ID: HRGMv2_4630_2_413
Type: CAZyme
Location: 425781 - 426785 (-)
Gene ID: HRGMv2_4630_2_414
Type: STP
Location: 426793 - 427932 (-)
Gene ID: HRGMv2_4630_2_415
Type: TC
Location: 428211 - 430274 (+)
Gene ID: HRGMv2_4630_2_416
Type: TC
Location: 430344 - 431129 (+)
Gene ID: HRGMv2_4630_2_417
Type: TC
Location: 431211 - 431921 (+)
Gene ID: HRGMv2_4630_2_418
Type: TC
Location: 431935 - 432684 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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