Cluster: HRGMv2_4630_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4630
- CGC Family ID: CGCFAM_01041
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4630_2 | HRGMv2_4630_2_369 | 377383 | 378255 | - | 3.A.15.2.1 |
| TC | HRGMv2_4630_2 | HRGMv2_4630_2_370 | 378259 | 379476 | - | 3.A.15.2.1 |
| TC | HRGMv2_4630_2 | HRGMv2_4630_2_371 | 379480 | 381183 | - | 3.A.15.2.1 |
| TC | HRGMv2_4630_2 | HRGMv2_4630_2_372 | 381412 | 381849 | + | 3.A.15.2.1 |
| NULL(UNKNOWN) | HRGMv2_4630_2 | HRGMv2_4630_2_373 | 382297 | 383898 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4630_2 | HRGMv2_4630_2_374 | 383895 | 384743 | + | GT2 |
Gene ID: HRGMv2_4630_2_369
Type: TC
Location: 377383 - 378255 (-)
Type: TC
Location: 377383 - 378255 (-)
Gene ID: HRGMv2_4630_2_370
Type: TC
Location: 378259 - 379476 (-)
Type: TC
Location: 378259 - 379476 (-)
Gene ID: HRGMv2_4630_2_371
Type: TC
Location: 379480 - 381183 (-)
Type: TC
Location: 379480 - 381183 (-)
Gene ID: HRGMv2_4630_2_372
Type: TC
Location: 381412 - 381849 (+)
Type: TC
Location: 381412 - 381849 (+)
Gene ID: HRGMv2_4630_2_373
Type:
Location: 382297 - 383898 (+)
Type:
Location: 382297 - 383898 (+)
Gene ID: HRGMv2_4630_2_374
Type: CAZyme
Location: 383895 - 384743 (+)
Type: CAZyme
Location: 383895 - 384743 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas nitroreducens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.