Cluster: HRGMv2_4630_CGC37
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4630
- CGC Family ID: CGCFAM_05828
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4630_12 | HRGMv2_4630_12_51 | 55583 | 56272 | + | GT51 |
| NULL(UNKNOWN) | HRGMv2_4630_12 | HRGMv2_4630_12_52 | 56269 | 56886 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4630_12 | HRGMv2_4630_12_53 | 56981 | 57835 | - | Sigma70_r2 | Sigma70_r4 |
| TC | HRGMv2_4630_12 | HRGMv2_4630_12_54 | 57945 | 58955 | - | 3.A.1.140.1 |
| TC | HRGMv2_4630_12 | HRGMv2_4630_12_55 | 58955 | 59626 | - | 3.A.1.140.1 |
| TC | HRGMv2_4630_12 | HRGMv2_4630_12_56 | 59623 | 61053 | - | 3.A.5.1.1 |
Gene ID: HRGMv2_4630_12_51
Type: CAZyme
Location: 55583 - 56272 (+)
Type: CAZyme
Location: 55583 - 56272 (+)
Gene ID: HRGMv2_4630_12_52
Type:
Location: 56269 - 56886 (-)
Type:
Location: 56269 - 56886 (-)
Gene ID: HRGMv2_4630_12_53
Type: STP
Location: 56981 - 57835 (-)
Type: STP
Location: 56981 - 57835 (-)
Gene ID: HRGMv2_4630_12_54
Type: TC
Location: 57945 - 58955 (-)
Type: TC
Location: 57945 - 58955 (-)
Gene ID: HRGMv2_4630_12_55
Type: TC
Location: 58955 - 59626 (-)
Type: TC
Location: 58955 - 59626 (-)
Gene ID: HRGMv2_4630_12_56
Type: TC
Location: 59623 - 61053 (-)
Type: TC
Location: 59623 - 61053 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas nitroreducens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.