Cluster: HRGMv2_4630_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4630
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4630_11 | HRGMv2_4630_11_99 | 104107 | 105717 | - | 3.A.1.5.21 |
| TC | HRGMv2_4630_11 | HRGMv2_4630_11_100 | 105719 | 106738 | - | 3.A.1.5.21 |
| TC | HRGMv2_4630_11 | HRGMv2_4630_11_101 | 106743 | 107825 | - | 3.A.1.5.24 |
| TC | HRGMv2_4630_11 | HRGMv2_4630_11_102 | 107825 | 109690 | - | 3.A.1.5.24 |
| TC | HRGMv2_4630_11 | HRGMv2_4630_11_103 | 109687 | 111516 | - | 3.A.1.5.21 |
| CAZyme | HRGMv2_4630_11 | HRGMv2_4630_11_104 | 111634 | 113256 | - | GH23 |
Gene ID: HRGMv2_4630_11_99
Type: TC
Location: 104107 - 105717 (-)
Type: TC
Location: 104107 - 105717 (-)
Gene ID: HRGMv2_4630_11_100
Type: TC
Location: 105719 - 106738 (-)
Type: TC
Location: 105719 - 106738 (-)
Gene ID: HRGMv2_4630_11_101
Type: TC
Location: 106743 - 107825 (-)
Type: TC
Location: 106743 - 107825 (-)
Gene ID: HRGMv2_4630_11_102
Type: TC
Location: 107825 - 109690 (-)
Type: TC
Location: 107825 - 109690 (-)
Gene ID: HRGMv2_4630_11_103
Type: TC
Location: 109687 - 111516 (-)
Type: TC
Location: 109687 - 111516 (-)
Gene ID: HRGMv2_4630_11_104
Type: CAZyme
Location: 111634 - 113256 (-)
Type: CAZyme
Location: 111634 - 113256 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas nitroreducens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.