Cluster: HRGMv2_4630_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4630
- CGC Family ID: CGCFAM_01751
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4630_7 | HRGMv2_4630_7_172 | 191119 | 192597 | - | 1.B.52.2.1 |
| pfam | HRGMv2_4630_7 | HRGMv2_4630_7_173 | 192735 | 193535 | - | TatD_DNase |
| CAZyme | HRGMv2_4630_7 | HRGMv2_4630_7_174 | 193760 | 195184 | + | GH23 |
| pfam | HRGMv2_4630_7 | HRGMv2_4630_7_175 | 195327 | 195761 | + | DoxX |
| TC | HRGMv2_4630_7 | HRGMv2_4630_7_176 | 195829 | 196857 | - | 2.A.98.1.3 |
Gene ID: HRGMv2_4630_7_172
Type: TC
Location: 191119 - 192597 (-)
Type: TC
Location: 191119 - 192597 (-)
Gene ID: HRGMv2_4630_7_173
Type: pfam
Location: 192735 - 193535 (-)
Type: pfam
Location: 192735 - 193535 (-)
Gene ID: HRGMv2_4630_7_174
Type: CAZyme
Location: 193760 - 195184 (+)
Type: CAZyme
Location: 193760 - 195184 (+)
Gene ID: HRGMv2_4630_7_175
Type: pfam
Location: 195327 - 195761 (+)
Type: pfam
Location: 195327 - 195761 (+)
Gene ID: HRGMv2_4630_7_176
Type: TC
Location: 195829 - 196857 (-)
Type: TC
Location: 195829 - 196857 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas nitroreducens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.