Cluster: HRGMv2_4630_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4630
- CGC Family ID: CGCFAM_10656
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4630_6 | HRGMv2_4630_6_51 | 51475 | 52074 | + | 5.B.5.1.2 |
| CAZyme | HRGMv2_4630_6 | HRGMv2_4630_6_52 | 52227 | 53435 | - | GH103 |
| CAZyme | HRGMv2_4630_6 | HRGMv2_4630_6_53 | 53432 | 54103 | - | PL7_1 |
| peptidase | HRGMv2_4630_6 | HRGMv2_4630_6_54 | 54286 | 55086 | + | S09.UNW |
| pfam | HRGMv2_4630_6 | HRGMv2_4630_6_55 | 55325 | 56074 | + | ACPS | 4PPT_N |
| TC | HRGMv2_4630_6 | HRGMv2_4630_6_56 | 56218 | 57321 | - | 3.A.1.8.1 |
| TC | HRGMv2_4630_6 | HRGMv2_4630_6_57 | 57329 | 58009 | - | 3.A.1.8.1 |
Gene ID: HRGMv2_4630_6_51
Type: TC
Location: 51475 - 52074 (+)
Type: TC
Location: 51475 - 52074 (+)
Gene ID: HRGMv2_4630_6_52
Type: CAZyme
Location: 52227 - 53435 (-)
Type: CAZyme
Location: 52227 - 53435 (-)
Gene ID: HRGMv2_4630_6_53
Type: CAZyme
Location: 53432 - 54103 (-)
Type: CAZyme
Location: 53432 - 54103 (-)
Gene ID: HRGMv2_4630_6_54
Type: peptidase
Location: 54286 - 55086 (+)
Type: peptidase
Location: 54286 - 55086 (+)
Gene ID: HRGMv2_4630_6_55
Type: pfam
Location: 55325 - 56074 (+)
Type: pfam
Location: 55325 - 56074 (+)
Gene ID: HRGMv2_4630_6_56
Type: TC
Location: 56218 - 57321 (-)
Type: TC
Location: 56218 - 57321 (-)
Gene ID: HRGMv2_4630_6_57
Type: TC
Location: 57329 - 58009 (-)
Type: TC
Location: 57329 - 58009 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas nitroreducens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.