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Cluster: HRGMv2_4630_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4630_1 HRGMv2_4630_1_64 69775 70740 + 4.D.2.4.3
CAZyme HRGMv2_4630_1 HRGMv2_4630_1_65 70899 73073 - CBM48 | GH13_9
CAZyme HRGMv2_4630_1 HRGMv2_4630_1_66 73070 76417 - GH13_16
CAZyme HRGMv2_4630_1 HRGMv2_4630_1_67 76435 78417 - GH13_3
pfam HRGMv2_4630_1 HRGMv2_4630_1_68 78537 79418 - Ku
NULL(UNKNOWN) HRGMv2_4630_1 HRGMv2_4630_1_69 79406 79672 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4630_1 HRGMv2_4630_1_70 79662 80180 - 9.B.20.2.1
NULL(UNKNOWN) HRGMv2_4630_1 HRGMv2_4630_1_71 80362 80766 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4630_1 HRGMv2_4630_1_72 80771 83230 - GT35
Gene ID: HRGMv2_4630_1_64
Type: TC
Location: 69775 - 70740 (+)
Gene ID: HRGMv2_4630_1_65
Type: CAZyme
Location: 70899 - 73073 (-)
Gene ID: HRGMv2_4630_1_66
Type: CAZyme
Location: 73070 - 76417 (-)
Gene ID: HRGMv2_4630_1_67
Type: CAZyme
Location: 76435 - 78417 (-)
Gene ID: HRGMv2_4630_1_68
Type: pfam
Location: 78537 - 79418 (-)
Gene ID: HRGMv2_4630_1_69
Type:
Location: 79406 - 79672 (-)
Gene ID: HRGMv2_4630_1_70
Type: TC
Location: 79662 - 80180 (-)
Gene ID: HRGMv2_4630_1_71
Type:
Location: 80362 - 80766 (+)
Gene ID: HRGMv2_4630_1_72
Type: CAZyme
Location: 80771 - 83230 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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