Cluster: HRGMv2_4627_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_00294
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_2 | HRGMv2_4627_2_47 | 74752 | 75639 | + | 8.A.1.7.1 |
| TC | HRGMv2_4627_2 | HRGMv2_4627_2_48 | 75636 | 77078 | + | 2.A.6.2.14 |
| NULL(UNKNOWN) | HRGMv2_4627_2 | HRGMv2_4627_2_49 | 77172 | 77807 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4627_2 | HRGMv2_4627_2_50 | 78124 | 79629 | + | DUF945 |
| TC | HRGMv2_4627_2 | HRGMv2_4627_2_51 | 79878 | 82358 | + | 1.B.55.1.1 |
| CAZyme | HRGMv2_4627_2 | HRGMv2_4627_2_52 | 82371 | 84368 | + | CE4 | GH153 |
| CAZyme | HRGMv2_4627_2 | HRGMv2_4627_2_53 | 84370 | 85725 | + | GT2 |
Gene ID: HRGMv2_4627_2_47
Type: TC
Location: 74752 - 75639 (+)
Type: TC
Location: 74752 - 75639 (+)
Gene ID: HRGMv2_4627_2_48
Type: TC
Location: 75636 - 77078 (+)
Type: TC
Location: 75636 - 77078 (+)
Gene ID: HRGMv2_4627_2_49
Type:
Location: 77172 - 77807 (+)
Type:
Location: 77172 - 77807 (+)
Gene ID: HRGMv2_4627_2_50
Type: pfam
Location: 78124 - 79629 (+)
Type: pfam
Location: 78124 - 79629 (+)
Gene ID: HRGMv2_4627_2_51
Type: TC
Location: 79878 - 82358 (+)
Type: TC
Location: 79878 - 82358 (+)
Gene ID: HRGMv2_4627_2_52
Type: CAZyme
Location: 82371 - 84368 (+)
Type: CAZyme
Location: 82371 - 84368 (+)
Gene ID: HRGMv2_4627_2_53
Type: CAZyme
Location: 84370 - 85725 (+)
Type: CAZyme
Location: 84370 - 85725 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.