Cluster: HRGMv2_4627_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_403 | 469576 | 470193 | + | GH23 |
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_404 | 470306 | 471607 | - | 1.B.25.1.10 |
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_405 | 471982 | 474030 | + | 3.A.23.1.1 |
| pfam | HRGMv2_4627_1 | HRGMv2_4627_1_406 | 474021 | 474878 | + | DUF4123 |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_407 | 474908 | 478438 | + | CBM50 |
Gene ID: HRGMv2_4627_1_403
Type: CAZyme
Location: 469576 - 470193 (+)
Type: CAZyme
Location: 469576 - 470193 (+)
Gene ID: HRGMv2_4627_1_404
Type: TC
Location: 470306 - 471607 (-)
Type: TC
Location: 470306 - 471607 (-)
Gene ID: HRGMv2_4627_1_405
Type: TC
Location: 471982 - 474030 (+)
Type: TC
Location: 471982 - 474030 (+)
Gene ID: HRGMv2_4627_1_406
Type: pfam
Location: 474021 - 474878 (+)
Type: pfam
Location: 474021 - 474878 (+)
Gene ID: HRGMv2_4627_1_407
Type: CAZyme
Location: 474908 - 478438 (+)
Type: CAZyme
Location: 474908 - 478438 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.