Cluster: HRGMv2_4627_CGC45
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_34 | HRGMv2_4627_34_13 | 12299 | 13801 | + | 3.A.5.1.1 |
| TC | HRGMv2_4627_34 | HRGMv2_4627_34_14 | 13798 | 14469 | + | 3.A.1.140.1 |
| TC | HRGMv2_4627_34 | HRGMv2_4627_34_15 | 14466 | 15491 | + | 3.A.1.140.1 |
| STP | HRGMv2_4627_34 | HRGMv2_4627_34_16 | 15607 | 16461 | + | Sigma70_r2 | Sigma70_r4 |
| CAZyme | HRGMv2_4627_34 | HRGMv2_4627_34_17 | 16668 | 17390 | - | GT51 |
Gene ID: HRGMv2_4627_34_13
Type: TC
Location: 12299 - 13801 (+)
Type: TC
Location: 12299 - 13801 (+)
Gene ID: HRGMv2_4627_34_14
Type: TC
Location: 13798 - 14469 (+)
Type: TC
Location: 13798 - 14469 (+)
Gene ID: HRGMv2_4627_34_15
Type: TC
Location: 14466 - 15491 (+)
Type: TC
Location: 14466 - 15491 (+)
Gene ID: HRGMv2_4627_34_16
Type: STP
Location: 15607 - 16461 (+)
Type: STP
Location: 15607 - 16461 (+)
Gene ID: HRGMv2_4627_34_17
Type: CAZyme
Location: 16668 - 17390 (-)
Type: CAZyme
Location: 16668 - 17390 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.