Cluster: HRGMv2_4627_CGC44
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_31 | HRGMv2_4627_31_26 | 33367 | 35325 | + | 9.B.164.1.1 |
| pfam | HRGMv2_4627_31 | HRGMv2_4627_31_27 | 35474 | 36847 | + | DUF1329 |
| TC | HRGMv2_4627_31 | HRGMv2_4627_31_28 | 37442 | 39361 | - | 1.B.52.2.1 |
| NULL(UNKNOWN) | HRGMv2_4627_31 | HRGMv2_4627_31_29 | 39617 | 40288 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4627_31 | HRGMv2_4627_31_30 | 40366 | 41844 | - | GT83 |
Gene ID: HRGMv2_4627_31_26
Type: TC
Location: 33367 - 35325 (+)
Type: TC
Location: 33367 - 35325 (+)
Gene ID: HRGMv2_4627_31_27
Type: pfam
Location: 35474 - 36847 (+)
Type: pfam
Location: 35474 - 36847 (+)
Gene ID: HRGMv2_4627_31_28
Type: TC
Location: 37442 - 39361 (-)
Type: TC
Location: 37442 - 39361 (-)
Gene ID: HRGMv2_4627_31_29
Type:
Location: 39617 - 40288 (+)
Type:
Location: 39617 - 40288 (+)
Gene ID: HRGMv2_4627_31_30
Type: CAZyme
Location: 40366 - 41844 (-)
Type: CAZyme
Location: 40366 - 41844 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.