Cluster: HRGMv2_4627_CGC43
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_00011
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_28 | HRGMv2_4627_28_48 | 54451 | 55248 | + | 3.A.1.103.6 |
| TC | HRGMv2_4627_28 | HRGMv2_4627_28_49 | 55248 | 56513 | + | 3.A.1.103.4 |
| CAZyme | HRGMv2_4627_28 | HRGMv2_4627_28_50 | 56510 | 57886 | + | GT4 |
| CAZyme | HRGMv2_4627_28 | HRGMv2_4627_28_51 | 57870 | 59000 | + | GT4 |
| CAZyme | HRGMv2_4627_28 | HRGMv2_4627_28_52 | 59001 | 60131 | + | GT4 |
Gene ID: HRGMv2_4627_28_48
Type: TC
Location: 54451 - 55248 (+)
Type: TC
Location: 54451 - 55248 (+)
Gene ID: HRGMv2_4627_28_49
Type: TC
Location: 55248 - 56513 (+)
Type: TC
Location: 55248 - 56513 (+)
Gene ID: HRGMv2_4627_28_50
Type: CAZyme
Location: 56510 - 57886 (+)
Type: CAZyme
Location: 56510 - 57886 (+)
Gene ID: HRGMv2_4627_28_51
Type: CAZyme
Location: 57870 - 59000 (+)
Type: CAZyme
Location: 57870 - 59000 (+)
Gene ID: HRGMv2_4627_28_52
Type: CAZyme
Location: 59001 - 60131 (+)
Type: CAZyme
Location: 59001 - 60131 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.