Cluster: HRGMv2_4627_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_00281
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_28 | HRGMv2_4627_28_41 | 45758 | 46894 | - | 9.B.97.5.1 |
| pfam | HRGMv2_4627_28 | HRGMv2_4627_28_42 | 46909 | 47793 | - | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 |
| CAZyme | HRGMv2_4627_28 | HRGMv2_4627_28_43 | 47790 | 49094 | - | GT4 |
| CAZyme | HRGMv2_4627_28 | HRGMv2_4627_28_44 | 49088 | 50722 | - | GT4 |
Gene ID: HRGMv2_4627_28_41
Type: TC
Location: 45758 - 46894 (-)
Type: TC
Location: 45758 - 46894 (-)
Gene ID: HRGMv2_4627_28_42
Type: pfam
Location: 46909 - 47793 (-)
Type: pfam
Location: 46909 - 47793 (-)
Gene ID: HRGMv2_4627_28_43
Type: CAZyme
Location: 47790 - 49094 (-)
Type: CAZyme
Location: 47790 - 49094 (-)
Gene ID: HRGMv2_4627_28_44
Type: CAZyme
Location: 49088 - 50722 (-)
Type: CAZyme
Location: 49088 - 50722 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.