Cluster: HRGMv2_4627_CGC40
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_24 | HRGMv2_4627_24_29 | 29379 | 31310 | - | 3.A.7.7.1 |
| peptidase | HRGMv2_4627_24 | HRGMv2_4627_24_30 | 31590 | 32996 | + | M10.060 |
| pfam | HRGMv2_4627_24 | HRGMv2_4627_24_31 | 33225 | 33593 | + | NTP_transf_9 |
| TC | HRGMv2_4627_24 | HRGMv2_4627_24_32 | 33751 | 35373 | - | 2.A.1.6.11 |
| CAZyme | HRGMv2_4627_24 | HRGMv2_4627_24_33 | 35527 | 37173 | - | AA3_2 |
Gene ID: HRGMv2_4627_24_29
Type: TC
Location: 29379 - 31310 (-)
Type: TC
Location: 29379 - 31310 (-)
Gene ID: HRGMv2_4627_24_30
Type: peptidase
Location: 31590 - 32996 (+)
Type: peptidase
Location: 31590 - 32996 (+)
Gene ID: HRGMv2_4627_24_31
Type: pfam
Location: 33225 - 33593 (+)
Type: pfam
Location: 33225 - 33593 (+)
Gene ID: HRGMv2_4627_24_32
Type: TC
Location: 33751 - 35373 (-)
Type: TC
Location: 33751 - 35373 (-)
Gene ID: HRGMv2_4627_24_33
Type: CAZyme
Location: 35527 - 37173 (-)
Type: CAZyme
Location: 35527 - 37173 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.