Cluster: HRGMv2_4627_CGC36
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4627_19 | HRGMv2_4627_19_54 | 60520 | 61470 | - | GH5 |
| pfam | HRGMv2_4627_19 | HRGMv2_4627_19_55 | 61900 | 62202 | + | LMWPc |
| TC | HRGMv2_4627_19 | HRGMv2_4627_19_56 | 62241 | 64469 | + | 8.A.3.3.2 |
| CAZyme | HRGMv2_4627_19 | HRGMv2_4627_19_57 | 64510 | 65592 | + | GT4 |
Gene ID: HRGMv2_4627_19_54
Type: CAZyme
Location: 60520 - 61470 (-)
Type: CAZyme
Location: 60520 - 61470 (-)
Gene ID: HRGMv2_4627_19_55
Type: pfam
Location: 61900 - 62202 (+)
Type: pfam
Location: 61900 - 62202 (+)
Gene ID: HRGMv2_4627_19_56
Type: TC
Location: 62241 - 64469 (+)
Type: TC
Location: 62241 - 64469 (+)
Gene ID: HRGMv2_4627_19_57
Type: CAZyme
Location: 64510 - 65592 (+)
Type: CAZyme
Location: 64510 - 65592 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.