Cluster: HRGMv2_4627_CGC35
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_19 | HRGMv2_4627_19_12 | 10954 | 12363 | - | 2.A.66.1.12 |
| pfam | HRGMv2_4627_19 | HRGMv2_4627_19_13 | 12582 | 13727 | + | 2-Hacid_dh | 2-Hacid_dh_C | DUF3410 |
| NULL(UNKNOWN) | HRGMv2_4627_19 | HRGMv2_4627_19_14 | 13932 | 14201 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4627_19 | HRGMv2_4627_19_15 | 14368 | 16146 | + | 3.A.1.201.8 |
| CAZyme | HRGMv2_4627_19 | HRGMv2_4627_19_16 | 16230 | 18158 | - | GH23 |
| TC | HRGMv2_4627_19 | HRGMv2_4627_19_17 | 18373 | 20295 | + | 3.A.1.120.6 |
Gene ID: HRGMv2_4627_19_12
Type: TC
Location: 10954 - 12363 (-)
Type: TC
Location: 10954 - 12363 (-)
Gene ID: HRGMv2_4627_19_13
Type: pfam
Location: 12582 - 13727 (+)
Type: pfam
Location: 12582 - 13727 (+)
Gene ID: HRGMv2_4627_19_14
Type:
Location: 13932 - 14201 (-)
Type:
Location: 13932 - 14201 (-)
Gene ID: HRGMv2_4627_19_15
Type: TC
Location: 14368 - 16146 (+)
Type: TC
Location: 14368 - 16146 (+)
Gene ID: HRGMv2_4627_19_16
Type: CAZyme
Location: 16230 - 18158 (-)
Type: CAZyme
Location: 16230 - 18158 (-)
Gene ID: HRGMv2_4627_19_17
Type: TC
Location: 18373 - 20295 (+)
Type: TC
Location: 18373 - 20295 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.