Cluster: HRGMv2_4627_CGC32
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4627_17 | HRGMv2_4627_17_46 | 46489 | 47910 | - | GH23 |
| pfam | HRGMv2_4627_17 | HRGMv2_4627_17_47 | 48148 | 48954 | + | TatD_DNase |
| TC | HRGMv2_4627_17 | HRGMv2_4627_17_48 | 49078 | 50559 | + | 1.B.52.2.1 |
Gene ID: HRGMv2_4627_17_46
Type: CAZyme
Location: 46489 - 47910 (-)
Type: CAZyme
Location: 46489 - 47910 (-)
Gene ID: HRGMv2_4627_17_47
Type: pfam
Location: 48148 - 48954 (+)
Type: pfam
Location: 48148 - 48954 (+)
Gene ID: HRGMv2_4627_17_48
Type: TC
Location: 49078 - 50559 (+)
Type: TC
Location: 49078 - 50559 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.