Cluster: HRGMv2_4627_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_14 | HRGMv2_4627_14_61 | 52985 | 53830 | - | 3.A.1.17.2 |
| STP | HRGMv2_4627_14 | HRGMv2_4627_14_62 | 53891 | 54877 | - | SBP_bac_3 |
| NULL(UNKNOWN) | HRGMv2_4627_14 | HRGMv2_4627_14_63 | 54972 | 55076 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4627_14 | HRGMv2_4627_14_64 | 55171 | 56118 | + | 3.A.1.17.10 |
| CAZyme | HRGMv2_4627_14 | HRGMv2_4627_14_65 | 56250 | 57149 | + | CE4 |
Gene ID: HRGMv2_4627_14_61
Type: TC
Location: 52985 - 53830 (-)
Type: TC
Location: 52985 - 53830 (-)
Gene ID: HRGMv2_4627_14_62
Type: STP
Location: 53891 - 54877 (-)
Type: STP
Location: 53891 - 54877 (-)
Gene ID: HRGMv2_4627_14_63
Type:
Location: 54972 - 55076 (+)
Type:
Location: 54972 - 55076 (+)
Gene ID: HRGMv2_4627_14_64
Type: TC
Location: 55171 - 56118 (+)
Type: TC
Location: 55171 - 56118 (+)
Gene ID: HRGMv2_4627_14_65
Type: CAZyme
Location: 56250 - 57149 (+)
Type: CAZyme
Location: 56250 - 57149 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.