Cluster: HRGMv2_4627_CGC3
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_00144
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_226 | 260007 | 261185 | - | 2.A.1.2.55 |
| pfam | HRGMv2_4627_1 | HRGMv2_4627_1_227 | 261328 | 261846 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_228 | 261928 | 263526 | - | GT83 |
| pfam | HRGMv2_4627_1 | HRGMv2_4627_1_229 | 263523 | 264902 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| NULL(UNKNOWN) | HRGMv2_4627_1 | HRGMv2_4627_1_230 | 264899 | 265312 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_231 | 265309 | 265653 | - | 2.A.7.22.1 |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_232 | 265650 | 267299 | - | GT83 |
| pfam | HRGMv2_4627_1 | HRGMv2_4627_1_233 | 267296 | 268180 | - | Polysacc_deac_1 |
| pfam | HRGMv2_4627_1 | HRGMv2_4627_1_234 | 268180 | 270171 | - | Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_235 | 270168 | 271199 | - | GT2 |
| STP | HRGMv2_4627_1 | HRGMv2_4627_1_236 | 271196 | 272344 | - | Aminotran_1_2 |
| pfam | HRGMv2_4627_1 | HRGMv2_4627_1_237 | 272735 | 273673 | + | Phage_integrase |
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_238 | 273674 | 274732 | - | 3.A.1.10.1 |
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_239 | 274729 | 276324 | - | 3.A.1.10.1 |
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_240 | 276328 | 277341 | - | 3.A.1.10.1 |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_241 | 277528 | 279045 | - | GT83 |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_242 | 279042 | 280763 | - | GT83 |
Gene ID: HRGMv2_4627_1_226
Type: TC
Location: 260007 - 261185 (-)
Type: TC
Location: 260007 - 261185 (-)
Gene ID: HRGMv2_4627_1_227
Type: pfam
Location: 261328 - 261846 (-)
Type: pfam
Location: 261328 - 261846 (-)
Gene ID: HRGMv2_4627_1_228
Type: CAZyme
Location: 261928 - 263526 (-)
Type: CAZyme
Location: 261928 - 263526 (-)
Gene ID: HRGMv2_4627_1_229
Type: pfam
Location: 263523 - 264902 (-)
Type: pfam
Location: 263523 - 264902 (-)
Gene ID: HRGMv2_4627_1_230
Type:
Location: 264899 - 265312 (-)
Type:
Location: 264899 - 265312 (-)
Gene ID: HRGMv2_4627_1_231
Type: TC
Location: 265309 - 265653 (-)
Type: TC
Location: 265309 - 265653 (-)
Gene ID: HRGMv2_4627_1_232
Type: CAZyme
Location: 265650 - 267299 (-)
Type: CAZyme
Location: 265650 - 267299 (-)
Gene ID: HRGMv2_4627_1_233
Type: pfam
Location: 267296 - 268180 (-)
Type: pfam
Location: 267296 - 268180 (-)
Gene ID: HRGMv2_4627_1_234
Type: pfam
Location: 268180 - 270171 (-)
Type: pfam
Location: 268180 - 270171 (-)
Gene ID: HRGMv2_4627_1_235
Type: CAZyme
Location: 270168 - 271199 (-)
Type: CAZyme
Location: 270168 - 271199 (-)
Gene ID: HRGMv2_4627_1_236
Type: STP
Location: 271196 - 272344 (-)
Type: STP
Location: 271196 - 272344 (-)
Gene ID: HRGMv2_4627_1_237
Type: pfam
Location: 272735 - 273673 (+)
Type: pfam
Location: 272735 - 273673 (+)
Gene ID: HRGMv2_4627_1_238
Type: TC
Location: 273674 - 274732 (-)
Type: TC
Location: 273674 - 274732 (-)
Gene ID: HRGMv2_4627_1_239
Type: TC
Location: 274729 - 276324 (-)
Type: TC
Location: 274729 - 276324 (-)
Gene ID: HRGMv2_4627_1_240
Type: TC
Location: 276328 - 277341 (-)
Type: TC
Location: 276328 - 277341 (-)
Gene ID: HRGMv2_4627_1_241
Type: CAZyme
Location: 277528 - 279045 (-)
Type: CAZyme
Location: 277528 - 279045 (-)
Gene ID: HRGMv2_4627_1_242
Type: CAZyme
Location: 279042 - 280763 (-)
Type: CAZyme
Location: 279042 - 280763 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.