Cluster: HRGMv2_4627_CGC25
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_05829
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_11 | HRGMv2_4627_11_33 | 33259 | 34395 | - | 9.B.186.1.1 |
| peptidase | HRGMv2_4627_11 | HRGMv2_4627_11_34 | 34509 | 35654 | - | S12.A11 |
| CAZyme | HRGMv2_4627_11 | HRGMv2_4627_11_35 | 35845 | 38184 | - | GH50 |
Gene ID: HRGMv2_4627_11_33
Type: TC
Location: 33259 - 34395 (-)
Type: TC
Location: 33259 - 34395 (-)
Gene ID: HRGMv2_4627_11_34
Type: peptidase
Location: 34509 - 35654 (-)
Type: peptidase
Location: 34509 - 35654 (-)
Gene ID: HRGMv2_4627_11_35
Type: CAZyme
Location: 35845 - 38184 (-)
Type: CAZyme
Location: 35845 - 38184 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.