Cluster: HRGMv2_4627_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_00359
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_10 | HRGMv2_4627_10_33 | 36879 | 38489 | - | 3.A.1.5.21 |
| TC | HRGMv2_4627_10 | HRGMv2_4627_10_34 | 38491 | 39510 | - | 3.A.1.5.21 |
| TC | HRGMv2_4627_10 | HRGMv2_4627_10_35 | 39512 | 40585 | - | 3.A.1.5.24 |
| TC | HRGMv2_4627_10 | HRGMv2_4627_10_36 | 40590 | 42431 | - | 3.A.1.5.24 |
| TC | HRGMv2_4627_10 | HRGMv2_4627_10_37 | 42428 | 44260 | - | 3.A.1.5.21 |
| CAZyme | HRGMv2_4627_10 | HRGMv2_4627_10_38 | 44436 | 45902 | - | GH23 |
Gene ID: HRGMv2_4627_10_33
Type: TC
Location: 36879 - 38489 (-)
Type: TC
Location: 36879 - 38489 (-)
Gene ID: HRGMv2_4627_10_34
Type: TC
Location: 38491 - 39510 (-)
Type: TC
Location: 38491 - 39510 (-)
Gene ID: HRGMv2_4627_10_35
Type: TC
Location: 39512 - 40585 (-)
Type: TC
Location: 39512 - 40585 (-)
Gene ID: HRGMv2_4627_10_36
Type: TC
Location: 40590 - 42431 (-)
Type: TC
Location: 40590 - 42431 (-)
Gene ID: HRGMv2_4627_10_37
Type: TC
Location: 42428 - 44260 (-)
Type: TC
Location: 42428 - 44260 (-)
Gene ID: HRGMv2_4627_10_38
Type: CAZyme
Location: 44436 - 45902 (-)
Type: CAZyme
Location: 44436 - 45902 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.