Cluster: HRGMv2_4627_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_01454
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_8 | HRGMv2_4627_8_138 | 178976 | 180325 | + | 2.A.40.7.6 |
| pfam | HRGMv2_4627_8 | HRGMv2_4627_8_139 | 180415 | 181041 | + | LysE |
| TC | HRGMv2_4627_8 | HRGMv2_4627_8_140 | 181225 | 181578 | - | 9.B.35.2.1 |
| CAZyme | HRGMv2_4627_8 | HRGMv2_4627_8_141 | 182000 | 182926 | + | CE4 |
Gene ID: HRGMv2_4627_8_138
Type: TC
Location: 178976 - 180325 (+)
Type: TC
Location: 178976 - 180325 (+)
Gene ID: HRGMv2_4627_8_139
Type: pfam
Location: 180415 - 181041 (+)
Type: pfam
Location: 180415 - 181041 (+)
Gene ID: HRGMv2_4627_8_140
Type: TC
Location: 181225 - 181578 (-)
Type: TC
Location: 181225 - 181578 (-)
Gene ID: HRGMv2_4627_8_141
Type: CAZyme
Location: 182000 - 182926 (+)
Type: CAZyme
Location: 182000 - 182926 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.