Cluster: HRGMv2_4627_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_6 | HRGMv2_4627_6_61 | 65526 | 67184 | - | 2.A.21.7.2 |
| TC | HRGMv2_4627_6 | HRGMv2_4627_6_62 | 67181 | 67492 | - | 9.B.136.1.1 |
| TC | HRGMv2_4627_6 | HRGMv2_4627_6_63 | 67735 | 68586 | - | 3.A.1.12.12 |
| CAZyme | HRGMv2_4627_6 | HRGMv2_4627_6_64 | 68888 | 70483 | + | GH17 |
Gene ID: HRGMv2_4627_6_61
Type: TC
Location: 65526 - 67184 (-)
Type: TC
Location: 65526 - 67184 (-)
Gene ID: HRGMv2_4627_6_62
Type: TC
Location: 67181 - 67492 (-)
Type: TC
Location: 67181 - 67492 (-)
Gene ID: HRGMv2_4627_6_63
Type: TC
Location: 67735 - 68586 (-)
Type: TC
Location: 67735 - 68586 (-)
Gene ID: HRGMv2_4627_6_64
Type: CAZyme
Location: 68888 - 70483 (+)
Type: CAZyme
Location: 68888 - 70483 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.