Cluster: HRGMv2_4627_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4627_5 | HRGMv2_4627_5_210 | 225147 | 227855 | - | GH19 |
| TC | HRGMv2_4627_5 | HRGMv2_4627_5_211 | 227907 | 229949 | - | 3.A.23.1.1 |
| STP | HRGMv2_4627_5 | HRGMv2_4627_5_212 | 229978 | 230979 | - | Pkinase |
| STP | HRGMv2_4627_5 | HRGMv2_4627_5_213 | 230976 | 231704 | - | SpoIIE |
| TC | HRGMv2_4627_5 | HRGMv2_4627_5_214 | 231704 | 235243 | - | 3.A.23.1.1 |
| TC | HRGMv2_4627_5 | HRGMv2_4627_5_215 | 235361 | 236131 | - | 3.A.23.1.1 |
| TC | HRGMv2_4627_5 | HRGMv2_4627_5_216 | 236137 | 237468 | - | 3.A.23.1.1 |
Gene ID: HRGMv2_4627_5_210
Type: CAZyme
Location: 225147 - 227855 (-)
Type: CAZyme
Location: 225147 - 227855 (-)
Gene ID: HRGMv2_4627_5_211
Type: TC
Location: 227907 - 229949 (-)
Type: TC
Location: 227907 - 229949 (-)
Gene ID: HRGMv2_4627_5_212
Type: STP
Location: 229978 - 230979 (-)
Type: STP
Location: 229978 - 230979 (-)
Gene ID: HRGMv2_4627_5_213
Type: STP
Location: 230976 - 231704 (-)
Type: STP
Location: 230976 - 231704 (-)
Gene ID: HRGMv2_4627_5_214
Type: TC
Location: 231704 - 235243 (-)
Type: TC
Location: 231704 - 235243 (-)
Gene ID: HRGMv2_4627_5_215
Type: TC
Location: 235361 - 236131 (-)
Type: TC
Location: 235361 - 236131 (-)
Gene ID: HRGMv2_4627_5_216
Type: TC
Location: 236137 - 237468 (-)
Type: TC
Location: 236137 - 237468 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.