Cluster: HRGMv2_4627_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_4 | HRGMv2_4627_4_148 | 141759 | 142043 | + | 1.E.56.1.7 |
| NULL(UNKNOWN) | HRGMv2_4627_4 | HRGMv2_4627_4_149 | 142050 | 142274 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4627_4 | HRGMv2_4627_4_150 | 142286 | 142906 | + | GH19_1 |
| pfam | HRGMv2_4627_4 | HRGMv2_4627_4_151 | 142932 | 143324 | + | Phage_gp49_66 |
| TC | HRGMv2_4627_4 | HRGMv2_4627_4_152 | 143335 | 143802 | + | 1.M.1.4.1 |
Gene ID: HRGMv2_4627_4_148
Type: TC
Location: 141759 - 142043 (+)
Type: TC
Location: 141759 - 142043 (+)
Gene ID: HRGMv2_4627_4_149
Type:
Location: 142050 - 142274 (+)
Type:
Location: 142050 - 142274 (+)
Gene ID: HRGMv2_4627_4_150
Type: CAZyme
Location: 142286 - 142906 (+)
Type: CAZyme
Location: 142286 - 142906 (+)
Gene ID: HRGMv2_4627_4_151
Type: pfam
Location: 142932 - 143324 (+)
Type: pfam
Location: 142932 - 143324 (+)
Gene ID: HRGMv2_4627_4_152
Type: TC
Location: 143335 - 143802 (+)
Type: TC
Location: 143335 - 143802 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.