Cluster: HRGMv2_4627_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_4 | HRGMv2_4627_4_94 | 99554 | 99838 | + | 1.E.56.1.7 |
| NULL(UNKNOWN) | HRGMv2_4627_4 | HRGMv2_4627_4_95 | 99845 | 100069 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4627_4 | HRGMv2_4627_4_96 | 100081 | 100701 | + | GH19_1 |
| pfam | HRGMv2_4627_4 | HRGMv2_4627_4_97 | 100727 | 101119 | + | Phage_gp49_66 |
| TC | HRGMv2_4627_4 | HRGMv2_4627_4_98 | 101130 | 101597 | + | 1.M.1.4.1 |
Gene ID: HRGMv2_4627_4_94
Type: TC
Location: 99554 - 99838 (+)
Type: TC
Location: 99554 - 99838 (+)
Gene ID: HRGMv2_4627_4_95
Type:
Location: 99845 - 100069 (+)
Type:
Location: 99845 - 100069 (+)
Gene ID: HRGMv2_4627_4_96
Type: CAZyme
Location: 100081 - 100701 (+)
Type: CAZyme
Location: 100081 - 100701 (+)
Gene ID: HRGMv2_4627_4_97
Type: pfam
Location: 100727 - 101119 (+)
Type: pfam
Location: 100727 - 101119 (+)
Gene ID: HRGMv2_4627_4_98
Type: TC
Location: 101130 - 101597 (+)
Type: TC
Location: 101130 - 101597 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.