Cluster: HRGMv2_4627_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4627_3 | HRGMv2_4627_3_373 | 428963 | 430033 | - | GT28 |
| TC | HRGMv2_4627_3 | HRGMv2_4627_3_374 | 430023 | 431240 | - | 2.A.103.1.1 |
| pfam | HRGMv2_4627_3 | HRGMv2_4627_3_375 | 431237 | 432583 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_4627_3 | HRGMv2_4627_3_376 | 432589 | 433671 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_4627_3_373
Type: CAZyme
Location: 428963 - 430033 (-)
Type: CAZyme
Location: 428963 - 430033 (-)
Gene ID: HRGMv2_4627_3_374
Type: TC
Location: 430023 - 431240 (-)
Type: TC
Location: 430023 - 431240 (-)
Gene ID: HRGMv2_4627_3_375
Type: pfam
Location: 431237 - 432583 (-)
Type: pfam
Location: 431237 - 432583 (-)
Gene ID: HRGMv2_4627_3_376
Type: TC
Location: 432589 - 433671 (-)
Type: TC
Location: 432589 - 433671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.