Cluster: HRGMv2_4627_CGC12
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_06213
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_3 | HRGMv2_4627_3_365 | 418947 | 420263 | + | 1.B.25.1.12 |
| TC | HRGMv2_4627_3 | HRGMv2_4627_3_366 | 420489 | 421997 | + | 9.B.34.1.3 |
| CAZyme | HRGMv2_4627_3 | HRGMv2_4627_3_367 | 422104 | 423015 | - | CE11 |
Gene ID: HRGMv2_4627_3_365
Type: TC
Location: 418947 - 420263 (+)
Type: TC
Location: 418947 - 420263 (+)
Gene ID: HRGMv2_4627_3_366
Type: TC
Location: 420489 - 421997 (+)
Type: TC
Location: 420489 - 421997 (+)
Gene ID: HRGMv2_4627_3_367
Type: CAZyme
Location: 422104 - 423015 (-)
Type: CAZyme
Location: 422104 - 423015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.