Cluster: HRGMv2_4627_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_3 | HRGMv2_4627_3_122 | 121678 | 124413 | - | 3.A.5.1.1 |
| pfam | HRGMv2_4627_3 | HRGMv2_4627_3_123 | 124658 | 125176 | + | DciA |
| pfam | HRGMv2_4627_3 | HRGMv2_4627_3_124 | 125267 | 126754 | - | DUF87 | HerA_C |
| TC | HRGMv2_4627_3 | HRGMv2_4627_3_125 | 126941 | 128830 | + | 1.B.52.2.1 |
| CAZyme | HRGMv2_4627_3 | HRGMv2_4627_3_126 | 129005 | 130117 | + | GT4 |
Gene ID: HRGMv2_4627_3_122
Type: TC
Location: 121678 - 124413 (-)
Type: TC
Location: 121678 - 124413 (-)
Gene ID: HRGMv2_4627_3_123
Type: pfam
Location: 124658 - 125176 (+)
Type: pfam
Location: 124658 - 125176 (+)
Gene ID: HRGMv2_4627_3_124
Type: pfam
Location: 125267 - 126754 (-)
Type: pfam
Location: 125267 - 126754 (-)
Gene ID: HRGMv2_4627_3_125
Type: TC
Location: 126941 - 128830 (+)
Type: TC
Location: 126941 - 128830 (+)
Gene ID: HRGMv2_4627_3_126
Type: CAZyme
Location: 129005 - 130117 (+)
Type: CAZyme
Location: 129005 - 130117 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.