Cluster: HRGMv2_4627_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_03927
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_2 | HRGMv2_4627_2_362 | 435251 | 435583 | - | 2.A.7.1.11 |
| TF | HRGMv2_4627_2 | HRGMv2_4627_2_363 | 435686 | 436588 | + | HTH_1 |
| CAZyme | HRGMv2_4627_2 | HRGMv2_4627_2_364 | 436600 | 437874 | + | GT30 |
| TC | HRGMv2_4627_2 | HRGMv2_4627_2_365 | 438041 | 439474 | - | 2.A.6.2.27 |
| pfam | HRGMv2_4627_2 | HRGMv2_4627_2_366 | 439932 | 441821 | + | ThiC_Rad_SAM | ThiC-associated |
| TC | HRGMv2_4627_2 | HRGMv2_4627_2_367 | 442022 | 443314 | + | 2.A.39.1.2 |
Gene ID: HRGMv2_4627_2_362
Type: TC
Location: 435251 - 435583 (-)
Type: TC
Location: 435251 - 435583 (-)
Gene ID: HRGMv2_4627_2_363
Type: TF
Location: 435686 - 436588 (+)
Type: TF
Location: 435686 - 436588 (+)
Gene ID: HRGMv2_4627_2_364
Type: CAZyme
Location: 436600 - 437874 (+)
Type: CAZyme
Location: 436600 - 437874 (+)
Gene ID: HRGMv2_4627_2_365
Type: TC
Location: 438041 - 439474 (-)
Type: TC
Location: 438041 - 439474 (-)
Gene ID: HRGMv2_4627_2_366
Type: pfam
Location: 439932 - 441821 (+)
Type: pfam
Location: 439932 - 441821 (+)
Gene ID: HRGMv2_4627_2_367
Type: TC
Location: 442022 - 443314 (+)
Type: TC
Location: 442022 - 443314 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.