Cluster: HRGMv2_4627_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4627
- CGC Family ID: CGCFAM_00529
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4627_1 | HRGMv2_4627_1_117 | 129338 | 129850 | + | 9.B.20.2.1 |
| NULL(UNKNOWN) | HRGMv2_4627_1 | HRGMv2_4627_1_118 | 129965 | 130123 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_119 | 130340 | 132337 | + | GH13_3 |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_120 | 132494 | 135835 | + | GH13_16 |
| CAZyme | HRGMv2_4627_1 | HRGMv2_4627_1_121 | 135838 | 138069 | + | CBM48 | GH13_9 |
Gene ID: HRGMv2_4627_1_117
Type: TC
Location: 129338 - 129850 (+)
Type: TC
Location: 129338 - 129850 (+)
Gene ID: HRGMv2_4627_1_118
Type:
Location: 129965 - 130123 (-)
Type:
Location: 129965 - 130123 (-)
Gene ID: HRGMv2_4627_1_119
Type: CAZyme
Location: 130340 - 132337 (+)
Type: CAZyme
Location: 130340 - 132337 (+)
Gene ID: HRGMv2_4627_1_120
Type: CAZyme
Location: 132494 - 135835 (+)
Type: CAZyme
Location: 132494 - 135835 (+)
Gene ID: HRGMv2_4627_1_121
Type: CAZyme
Location: 135838 - 138069 (+)
Type: CAZyme
Location: 135838 - 138069 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E parakoreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.