Cluster: HRGMv2_4626_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4626_11 | HRGMv2_4626_11_29 | 40318 | 42396 | - | 1.B.14.9.5 |
| peptidase | HRGMv2_4626_11 | HRGMv2_4626_11_30 | 42548 | 46834 | - | T08.UNW |
| pfam | HRGMv2_4626_11 | HRGMv2_4626_11_31 | 47094 | 48851 | + | Carbam_trans_N | Carbam_trans_C |
| CAZyme | HRGMv2_4626_11 | HRGMv2_4626_11_32 | 48835 | 49965 | + | GT4 |
Gene ID: HRGMv2_4626_11_29
Type: TC
Location: 40318 - 42396 (-)
Type: TC
Location: 40318 - 42396 (-)
Gene ID: HRGMv2_4626_11_30
Type: peptidase
Location: 42548 - 46834 (-)
Type: peptidase
Location: 42548 - 46834 (-)
Gene ID: HRGMv2_4626_11_31
Type: pfam
Location: 47094 - 48851 (+)
Type: pfam
Location: 47094 - 48851 (+)
Gene ID: HRGMv2_4626_11_32
Type: CAZyme
Location: 48835 - 49965 (+)
Type: CAZyme
Location: 48835 - 49965 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.