Cluster: HRGMv2_4626_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_06213
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_10 | HRGMv2_4626_10_38 | 38082 | 38993 | + | CE11 |
| TC | HRGMv2_4626_10 | HRGMv2_4626_10_39 | 39044 | 40588 | - | 9.B.34.1.3 |
| TC | HRGMv2_4626_10 | HRGMv2_4626_10_40 | 40624 | 42117 | - | 9.B.34.1.3 |
| TC | HRGMv2_4626_10 | HRGMv2_4626_10_41 | 42204 | 43523 | - | 1.B.25.1.12 |
Gene ID: HRGMv2_4626_10_38
Type: CAZyme
Location: 38082 - 38993 (+)
Type: CAZyme
Location: 38082 - 38993 (+)
Gene ID: HRGMv2_4626_10_39
Type: TC
Location: 39044 - 40588 (-)
Type: TC
Location: 39044 - 40588 (-)
Gene ID: HRGMv2_4626_10_40
Type: TC
Location: 40624 - 42117 (-)
Type: TC
Location: 40624 - 42117 (-)
Gene ID: HRGMv2_4626_10_41
Type: TC
Location: 42204 - 43523 (-)
Type: TC
Location: 42204 - 43523 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.