Cluster: HRGMv2_4626_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4626_10 | HRGMv2_4626_10_29 | 27424 | 28506 | + | 9.B.146.1.6 |
| pfam | HRGMv2_4626_10 | HRGMv2_4626_10_30 | 28512 | 29858 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_4626_10 | HRGMv2_4626_10_31 | 29855 | 31069 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_4626_10 | HRGMv2_4626_10_32 | 31059 | 32129 | + | GT28 |
Gene ID: HRGMv2_4626_10_29
Type: TC
Location: 27424 - 28506 (+)
Type: TC
Location: 27424 - 28506 (+)
Gene ID: HRGMv2_4626_10_30
Type: pfam
Location: 28512 - 29858 (+)
Type: pfam
Location: 28512 - 29858 (+)
Gene ID: HRGMv2_4626_10_31
Type: TC
Location: 29855 - 31069 (+)
Type: TC
Location: 29855 - 31069 (+)
Gene ID: HRGMv2_4626_10_32
Type: CAZyme
Location: 31059 - 32129 (+)
Type: CAZyme
Location: 31059 - 32129 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.