Cluster: HRGMv2_4626_CGC33
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_194 | HRGMv2_4626_194_1 | 126 | 1787 | - | GH17 |
| TC | HRGMv2_4626_194 | HRGMv2_4626_194_2 | 2005 | 2823 | + | 3.A.1.12.12 |
| TC | HRGMv2_4626_194 | HRGMv2_4626_194_3 | 3047 | 3358 | + | 9.B.136.1.1 |
| TC | HRGMv2_4626_194 | HRGMv2_4626_194_4 | 3355 | 5013 | + | 2.A.21.7.2 |
Gene ID: HRGMv2_4626_194_1
Type: CAZyme
Location: 126 - 1787 (-)
Type: CAZyme
Location: 126 - 1787 (-)
Gene ID: HRGMv2_4626_194_2
Type: TC
Location: 2005 - 2823 (+)
Type: TC
Location: 2005 - 2823 (+)
Gene ID: HRGMv2_4626_194_3
Type: TC
Location: 3047 - 3358 (+)
Type: TC
Location: 3047 - 3358 (+)
Gene ID: HRGMv2_4626_194_4
Type: TC
Location: 3355 - 5013 (+)
Type: TC
Location: 3355 - 5013 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.