Cluster: HRGMv2_4626_CGC32
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_00474
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4626_140 | HRGMv2_4626_140_3 | 1040 | 2206 | + | 2.A.1.2.65 |
| pfam | HRGMv2_4626_140 | HRGMv2_4626_140_4 | 2227 | 3276 | + | Oxidored_FMN |
| STP | HRGMv2_4626_140 | HRGMv2_4626_140_5 | 3917 | 4921 | - | Sigma70_r2 | Sigma70_r3 | Sigma70_r4 |
| CAZyme | HRGMv2_4626_140 | HRGMv2_4626_140_6 | 5028 | 5855 | - | CBM50 |
Gene ID: HRGMv2_4626_140_3
Type: TC
Location: 1040 - 2206 (+)
Type: TC
Location: 1040 - 2206 (+)
Gene ID: HRGMv2_4626_140_4
Type: pfam
Location: 2227 - 3276 (+)
Type: pfam
Location: 2227 - 3276 (+)
Gene ID: HRGMv2_4626_140_5
Type: STP
Location: 3917 - 4921 (-)
Type: STP
Location: 3917 - 4921 (-)
Gene ID: HRGMv2_4626_140_6
Type: CAZyme
Location: 5028 - 5855 (-)
Type: CAZyme
Location: 5028 - 5855 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.