Cluster: HRGMv2_4626_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_01454
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_112 | HRGMv2_4626_112_7 | 5914 | 6843 | - | CE4 |
| TC | HRGMv2_4626_112 | HRGMv2_4626_112_8 | 7218 | 7571 | + | 9.B.35.2.2 |
| pfam | HRGMv2_4626_112 | HRGMv2_4626_112_9 | 7809 | 8435 | - | LysE |
| TC | HRGMv2_4626_112 | HRGMv2_4626_112_10 | 8496 | 9845 | - | 2.A.40.7.6 |
Gene ID: HRGMv2_4626_112_7
Type: CAZyme
Location: 5914 - 6843 (-)
Type: CAZyme
Location: 5914 - 6843 (-)
Gene ID: HRGMv2_4626_112_8
Type: TC
Location: 7218 - 7571 (+)
Type: TC
Location: 7218 - 7571 (+)
Gene ID: HRGMv2_4626_112_9
Type: pfam
Location: 7809 - 8435 (-)
Type: pfam
Location: 7809 - 8435 (-)
Gene ID: HRGMv2_4626_112_10
Type: TC
Location: 8496 - 9845 (-)
Type: TC
Location: 8496 - 9845 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.