Cluster: HRGMv2_4626_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4626_96 | HRGMv2_4626_96_8 | 4578 | 5453 | + | 3.A.1.14.21 |
| TC | HRGMv2_4626_96 | HRGMv2_4626_96_9 | 5450 | 6487 | + | 3.A.1.14.21 |
| TC | HRGMv2_4626_96 | HRGMv2_4626_96_10 | 6487 | 7254 | + | 3.A.1.14.21 |
| pfam | HRGMv2_4626_96 | HRGMv2_4626_96_11 | 7488 | 7760 | - | TfoX_C |
| pfam | HRGMv2_4626_96 | HRGMv2_4626_96_12 | 8073 | 9629 | - | APH | AAA_33 |
| CAZyme | HRGMv2_4626_96 | HRGMv2_4626_96_13 | 9746 | 12070 | + | GT51 |
Gene ID: HRGMv2_4626_96_8
Type: TC
Location: 4578 - 5453 (+)
Type: TC
Location: 4578 - 5453 (+)
Gene ID: HRGMv2_4626_96_9
Type: TC
Location: 5450 - 6487 (+)
Type: TC
Location: 5450 - 6487 (+)
Gene ID: HRGMv2_4626_96_10
Type: TC
Location: 6487 - 7254 (+)
Type: TC
Location: 6487 - 7254 (+)
Gene ID: HRGMv2_4626_96_11
Type: pfam
Location: 7488 - 7760 (-)
Type: pfam
Location: 7488 - 7760 (-)
Gene ID: HRGMv2_4626_96_12
Type: pfam
Location: 8073 - 9629 (-)
Type: pfam
Location: 8073 - 9629 (-)
Gene ID: HRGMv2_4626_96_13
Type: CAZyme
Location: 9746 - 12070 (+)
Type: CAZyme
Location: 9746 - 12070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.