Cluster: HRGMv2_4626_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4626_93 | HRGMv2_4626_93_2 | 1929 | 3374 | + | 2.A.53.3.13 |
| NULL(UNKNOWN) | HRGMv2_4626_93 | HRGMv2_4626_93_3 | 3476 | 3922 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4626_93 | HRGMv2_4626_93_4 | 4143 | 6065 | - | 1.B.52.2.1 |
| pfam | HRGMv2_4626_93 | HRGMv2_4626_93_5 | 6398 | 7156 | + | His_Phos_1 |
| NULL(UNKNOWN) | HRGMv2_4626_93 | HRGMv2_4626_93_6 | 7386 | 7892 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4626_93 | HRGMv2_4626_93_7 | 7979 | 9445 | - | GT83 |
| TC | HRGMv2_4626_93 | HRGMv2_4626_93_8 | 9643 | 10938 | - | 1.B.19.1.3 |
Gene ID: HRGMv2_4626_93_2
Type: TC
Location: 1929 - 3374 (+)
Type: TC
Location: 1929 - 3374 (+)
Gene ID: HRGMv2_4626_93_3
Type:
Location: 3476 - 3922 (-)
Type:
Location: 3476 - 3922 (-)
Gene ID: HRGMv2_4626_93_4
Type: TC
Location: 4143 - 6065 (-)
Type: TC
Location: 4143 - 6065 (-)
Gene ID: HRGMv2_4626_93_5
Type: pfam
Location: 6398 - 7156 (+)
Type: pfam
Location: 6398 - 7156 (+)
Gene ID: HRGMv2_4626_93_6
Type:
Location: 7386 - 7892 (-)
Type:
Location: 7386 - 7892 (-)
Gene ID: HRGMv2_4626_93_7
Type: CAZyme
Location: 7979 - 9445 (-)
Type: CAZyme
Location: 7979 - 9445 (-)
Gene ID: HRGMv2_4626_93_8
Type: TC
Location: 9643 - 10938 (-)
Type: TC
Location: 9643 - 10938 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.