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Cluster: HRGMv2_4626_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4626_83 HRGMv2_4626_83_3 1956 2690 - CE14
TF HRGMv2_4626_83 HRGMv2_4626_83_4 2847 4052 + HTH_1 | HTH_1
TC HRGMv2_4626_83 HRGMv2_4626_83_5 4214 5461 - 1.B.25.1.14
pfam HRGMv2_4626_83 HRGMv2_4626_83_6 5518 6780 - LigB | LigA
TC HRGMv2_4626_83 HRGMv2_4626_83_7 6805 8145 - 2.A.1.15.1
pfam HRGMv2_4626_83 HRGMv2_4626_83_8 8350 9312 - T2SSF
pfam HRGMv2_4626_83 HRGMv2_4626_83_9 9340 10326 - T2SSF
TC HRGMv2_4626_83 HRGMv2_4626_83_10 10323 11762 - 3.A.7.18.1
TC HRGMv2_4626_83 HRGMv2_4626_83_11 11766 12983 - 3.A.7.18.1
Gene ID: HRGMv2_4626_83_3
Type: CAZyme
Location: 1956 - 2690 (-)
Gene ID: HRGMv2_4626_83_4
Type: TF
Location: 2847 - 4052 (+)
Gene ID: HRGMv2_4626_83_5
Type: TC
Location: 4214 - 5461 (-)
Gene ID: HRGMv2_4626_83_6
Type: pfam
Location: 5518 - 6780 (-)
Gene ID: HRGMv2_4626_83_7
Type: TC
Location: 6805 - 8145 (-)
Gene ID: HRGMv2_4626_83_8
Type: pfam
Location: 8350 - 9312 (-)
Gene ID: HRGMv2_4626_83_9
Type: pfam
Location: 9340 - 10326 (-)
Gene ID: HRGMv2_4626_83_10
Type: TC
Location: 10323 - 11762 (-)
Gene ID: HRGMv2_4626_83_11
Type: TC
Location: 11766 - 12983 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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