Cluster: HRGMv2_4626_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4626
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4626_61 | HRGMv2_4626_61_18 | 18234 | 19841 | - | GT83 |
| pfam | HRGMv2_4626_61 | HRGMv2_4626_61_19 | 19916 | 21274 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | HRGMv2_4626_61 | HRGMv2_4626_61_20 | 21271 | 21672 | - | EamA |
| TC | HRGMv2_4626_61 | HRGMv2_4626_61_21 | 21669 | 22013 | - | 2.A.7.22.2 |
| CAZyme | HRGMv2_4626_61 | HRGMv2_4626_61_22 | 22010 | 23659 | - | GT83 |
Gene ID: HRGMv2_4626_61_18
Type: CAZyme
Location: 18234 - 19841 (-)
Type: CAZyme
Location: 18234 - 19841 (-)
Gene ID: HRGMv2_4626_61_19
Type: pfam
Location: 19916 - 21274 (-)
Type: pfam
Location: 19916 - 21274 (-)
Gene ID: HRGMv2_4626_61_20
Type: pfam
Location: 21271 - 21672 (-)
Type: pfam
Location: 21271 - 21672 (-)
Gene ID: HRGMv2_4626_61_21
Type: TC
Location: 21669 - 22013 (-)
Type: TC
Location: 21669 - 22013 (-)
Gene ID: HRGMv2_4626_61_22
Type: CAZyme
Location: 22010 - 23659 (-)
Type: CAZyme
Location: 22010 - 23659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.