Cluster: HRGMv2_4626_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4626
- CGC Family ID: CGCFAM_02711
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4626_61 | HRGMv2_4626_61_1 | 3 | 377 | + | 1.B.25.1.10 |
| NULL(UNKNOWN) | HRGMv2_4626_61 | HRGMv2_4626_61_2 | 271 | 1326 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4626_61 | HRGMv2_4626_61_3 | 1354 | 2652 | - | GT4 |
| TC | HRGMv2_4626_61 | HRGMv2_4626_61_4 | 3128 | 4198 | + | 9.B.10.1.1 |
Gene ID: HRGMv2_4626_61_1
Type: TC
Location: 3 - 377 (+)
Type: TC
Location: 3 - 377 (+)
Gene ID: HRGMv2_4626_61_2
Type:
Location: 271 - 1326 (-)
Type:
Location: 271 - 1326 (-)
Gene ID: HRGMv2_4626_61_3
Type: CAZyme
Location: 1354 - 2652 (-)
Type: CAZyme
Location: 1354 - 2652 (-)
Gene ID: HRGMv2_4626_61_4
Type: TC
Location: 3128 - 4198 (+)
Type: TC
Location: 3128 - 4198 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fragi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.